Repeat Type
MISA
SciRoKo
TRF
mononucleotide
89
88
3
dinucleotide
212
210
37
trinucleotide
479
475
77
tetranucleotide
120
117
27
pentanucleotide
301
302
300
298
hexanucleotide
421
419
418
99
Table. 1: A summary table showing frequencies of all Repeat Types in the Whole Genome of Aspegillus fumigatus
Repeat type
Msatfinder
SSRServer
mono
16
2
di
53
52
6
tri
97
96
13
tetra
26
5
penta
66
65
63
hexa
86
Table. 2: Showing frequency variation in Repeat Types of chromosome 1.
-
33
4
84
14
30
29
9
51
79
78
25
Table. 3: Showing frequency variation in Repeat Types of chromosome 2.
1
35
34
7
19
12
Table. 4: Showing frequency variation in Repeat Types of chromosome 3
8
67
46
48
61
62
Table. 5: Showing frequency variation in Repeat Types of chromosome 4.
10
32
72
11
15
59
57
58
Table. 6: Showing frequency variation in Repeat Types of chromosome 5.
0
28
50
49
69
Table. 7: Showing frequency variation in Repeat Types of chromosome 6.
23
38
Table. 8: Showing frequency variation in Repeat Types of chromosome 7.
24
20
Table. 9: Showing frequency variation in Repeat Types of chromosome 8
Mono
Di
Tri
Tetra
Penta
Hexa
SSR-Search mode: Perfect; MISA-mode
Alignment Parameters (match, mismatch, indel): 2,7,7 Minimum Alignment Score to report repeat:50 Maximum Period Size:10
Table. 10:
Figure 1: Frequency Variation in Repeat Types of Genome of A. fumigatus using different Tools.
Figure 2: Frequency Variation in Repeat Types of chromosome 1 of A. fumigatus using different Tools.
Figure 3:Frequency Variation in Repeat Types of chromosome 2 of A. fumigatus using different Tools.
Figure 4: Frequency Variation in Repeat Types of chromosome 3 of A. fumigatus using different Tools.
Figure 5: Frequency Variation in Repeat Types of chromosome 4 of A. fumigatus using different Tools.
Figure 6: Frequency Variation in Repeat Types of chromosome 5 of A. fumigatus using different Tools.
Figure 7:Frequency Variation in Repeat Types of chromosome 6 of A. fumigatus using different Tools.
Figure 8: Frequency Variation in Repeat Types of chromosome 7 of A. fumigatus using different Tools.
Figure 9:Frequency Variation in Repeat Types of chromosome 8 of A. fumigatus using different Tools.
Figure 10:Flowchart represents a methodology of work
Tables at a glance